ChIP-Atlas: SRX1813543

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: RNA polymerase
Antigen: RNA polymerase II

Cell type

Cell type Class: Pluripotent stem cell
Cell type: iPS cells
NA: NA

Attributes by original data submitter

Sample

source_name: iPS_PolII
chip antibody: Rpb1 CTD (Cell Signaling 2629S Lot: 3)
cell line: iPS cells
protocol: iPS 3s2
passage: 20

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 12245091
Reads aligned (%): 85.3
Duplicates removed (%): 21.3
Number of peaks: 549 (qval < 1E-05)

hg19

Number of total reads: 12245091
Reads aligned (%): 84.8
Duplicates removed (%): 21.4
Number of peaks: 528 (qval < 1E-05)

Base call quality data from DBCLS SRA