SRX180940
GSM992935: d0 5hmC Affinity pull-down; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34-pos cell in erythroid differentiation
time point
day0
cell type
primary CD34+ stem/progenitor cells

Sequenced DNA Library

library_name
GSM992935: d0 5hmC Affinity pull-down
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
86121038
Reads aligned (%)
98.9
Duplicates removed (%)
15.9
Number of peaks
232684 (qval < 1E-05)

hg19

Number of total reads
86121038
Reads aligned (%)
98.6
Duplicates removed (%)
16.1
Number of peaks
232333 (qval < 1E-05)

Base call quality data from DBCLS SRA