SRX180895
GSM992733: Day 0 H3K27me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Lung
Cell type
AT2
NA
NA

Attributes by original data submitter

Sample

source_name
Alveolar Epithelial type 2 (AT2 cell)
Sex
female
cod
anoxia
cell type
Primary isolated AT2 cells
chip antibody
H3K27me3
chip antibody manufacturer
Millipore

Sequenced DNA Library

library_name
GSM992733: Day 0 H3K27me3 ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30091743
Reads aligned (%)
69.7
Duplicates removed (%)
4.1
Number of peaks
1133 (qval < 1E-05)

hg19

Number of total reads
30091743
Reads aligned (%)
69.2
Duplicates removed (%)
5.1
Number of peaks
1303 (qval < 1E-05)

Base call quality data from DBCLS SRA