SRX180783
GSM992386: HUES6-No treatment-p39; Homo sapiens; Bisulfite-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC HUES6
NA
NA

Attributes by original data submitter

Sample

source_name
HUES6-No_treatment-p39
cell type
Human embryonic stem cells
treatment
No_treatment
passage number
39

Sequenced DNA Library

library_name
GSM992386: HUES6-No_treatment-p39
library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26121349
Reads aligned (%)
95.4
Coverage rate (×)
1.9
Number of hyper MRs
33973 (qval < 1E-05)

hg19

Number of total reads
26121349
Reads aligned (%)
95.6
Coverage rate (×)
2.1
Number of hyper MRs
35024 (qval < 1E-05)

Base call quality data from DBCLS SRA