SRX1806639
Input DNA sequencing of C13* shCEBPB(1) cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
C13
NA
NA

Attributes by original data submitter

Sample

isolate
not applicable
age
not applicable
biomaterial_provider
Cancer Biology Research Center, 1095 Jiefang Anv. Wuhan, 430032, China
sex
female
tissue
ovary
cell_line
C13*
cell_type
epithelial
disease
adenocarcinoma

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36239589
Reads aligned (%)
98.9
Duplicates removed (%)
6.3
Number of peaks
1063 (qval < 1E-05)

hg19

Number of total reads
36239589
Reads aligned (%)
98.1
Duplicates removed (%)
8.1
Number of peaks
1156 (qval < 1E-05)

Base call quality data from DBCLS SRA