Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM6A

Cell type

Cell type Class
Others
Cell type
Bladder epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
BdEC
chip antibody
UTX (CST, 33510)
cell line
BdEC
cell type
Human Primary Bladder Epithelial Cells
treatment
Untreated

Sequenced DNA Library

library_name
GSM6684683
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin extraction and chromatin immunoprecipitation was performed following Schubeler Lab Protocol (Weber et al. 2007). ChIP-seq libraries were prepared using NEBNext DNA Ultra II kit in EMBL GeneCore Facility.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
82106332
Reads aligned (%)
95.6
Duplicates removed (%)
26.6
Number of peaks
5613 (qval < 1E-05)

hg19

Number of total reads
82106332
Reads aligned (%)
94.9
Duplicates removed (%)
27.4
Number of peaks
5003 (qval < 1E-05)

Base call quality data from DBCLS SRA