Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TWIST1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural crests
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESC
differentiation batch
R18
cell line
H9 hESC
cell type
hESC-derived P4 cranial neural crest cells (CNCCs)
genotype
S9CC13
treatment
dTAGV-1
treatment time
48h
relative sox9 level
25.8
antibody
TWIST1 (Abcam, ab50887)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
9433634
Reads aligned (%)
89.5
Duplicates removed (%)
19.0
Number of peaks
10406 (qval < 1E-05)

hg19

Number of total reads
9433634
Reads aligned (%)
89.4
Duplicates removed (%)
19.0
Number of peaks
10375 (qval < 1E-05)

Base call quality data from DBCLS SRA