SRX179249
GSM988183: Sperm Donor Pool H3K4me1 ChIP-seq, rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Gonad
Cell type
Sperm
NA
NA

Attributes by original data submitter

Sample

source_name
Sperm donor pool, H3K4me1 ChIP
cell type
sperm
chip antibody
anti-H3K4me1
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM988183: Sperm Donor Pool H3K4me1 ChIP-seq, rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7157643
Reads aligned (%)
99.0
Duplicates removed (%)
1.5
Number of peaks
27 (qval < 1E-05)

hg19

Number of total reads
7157643
Reads aligned (%)
98.6
Duplicates removed (%)
1.8
Number of peaks
27 (qval < 1E-05)

Base call quality data from DBCLS SRA