Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
22Rv1
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate
tissue
prostate
cell line
22Rv1
cell type
prostate carcinoma epithelial cell
chip antibody
Precision AG10008; RRID: AB_2631058
treatment
N/A

Sequenced DNA Library

library_name
GSM6604335
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked and DNA sheared and processed for ChIP sequencing acording to standard protocols Library preparation was done using Swift's Biosciences Accel-NGS 2S Plus Library Kits for Illumina platforms. 10 ng of DNA was used for library preparation and kit's protocol was followed for a 200 base pair insert. An additional two sided bead clean up was done after the PCR step using SPRI beads with the formula .6X, then using the supernatant, 1.2x. The library was pooled to 1 nM and the sequenced on a NextSeq 500 using the standard loading protocol.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
36200166
Reads aligned (%)
95.9
Duplicates removed (%)
6.9
Number of peaks
1194 (qval < 1E-05)

hg19

Number of total reads
36200166
Reads aligned (%)
95.1
Duplicates removed (%)
8.3
Number of peaks
1113 (qval < 1E-05)

Base call quality data from DBCLS SRA