Antigen

Antigen Class

TFs and others

Antigen

Kdm1a

Cell type

Cell type Class

Adipocyte

Cell type

Brown adipocytes

NA

NA

Sample

source_name

Differentiated primary brown adipocytes

strain background

C57BL/6 N

genotype/variation

Control

cell type

differentiated primary brown adipocytes

passages

2-3

chip antibody

LSD1 (20752, homemade, Schüle lab)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

PMID: 26704968 Libraries were prepared from immunoprecipitated DNA according to standard methods. ChIP-seq libraries were sequenced using a HiSeq 2000 (Illumina) and mapped to the mm10 reference genome using bowtie 2 PMID: 19261174

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

35579693

Reads aligned (%)

0.0

Duplicates removed (%)

20.2

Number of peaks

0 (qval < 1E-05)

mm9

Number of total reads

35579693

Reads aligned (%)

0.0

Duplicates removed (%)

19.9

Number of peaks

0 (qval < 1E-05)