Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
VA-13
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
transformed lung fibroblasts, TERT negative
cell line
VA13

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and TERT-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the NEB NEXT ULTRA ILLUMINA Library preparation kit (E7370L).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
29674102
Reads aligned (%)
98.4
Duplicates removed (%)
5.2
Number of peaks
1182 (qval < 1E-05)

hg19

Number of total reads
29674102
Reads aligned (%)
97.5
Duplicates removed (%)
5.5
Number of peaks
457 (qval < 1E-05)

Base call quality data from DBCLS SRA