SRX1769320
GSM2154741: H3122 LR Pano H3K27ac ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
NCI-H3122
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
H3122 lung cancer cell line
cell line
H3122
treatment
Certinib + Panobinostat

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard DNA extraction protocol using Qiagen prep kit. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40781120
Reads aligned (%)
86.1
Duplicates removed (%)
3.5
Number of peaks
29114 (qval < 1E-05)

hg19

Number of total reads
40781120
Reads aligned (%)
85.8
Duplicates removed (%)
3.9
Number of peaks
29095 (qval < 1E-05)

Base call quality data from DBCLS SRA