SRX1769316
GSM2154737: H3122 LR input ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
NCI-H3122
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
H3122 lung cancer cell line
cell line
H3122
treatment
Certinib

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard DNA extraction protocol using Qiagen prep kit. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
51769246
Reads aligned (%)
96.2
Duplicates removed (%)
39.0
Number of peaks
1117 (qval < 1E-05)

hg19

Number of total reads
51769246
Reads aligned (%)
95.3
Duplicates removed (%)
40.1
Number of peaks
1011 (qval < 1E-05)

Base call quality data from DBCLS SRA