SRX176879
GSM986082: siGATA H3K4me1 E2 r1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
siGATA_H3K4me1_estrogen
cell line
MCF-7
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
genotype/variation
GATA knockdown
tranfected with
ON-TARGET plus siRNA J-0033781-09, siGATA3-Custom-1, siGATA3-Custom-2
chip antibody
anti-H3K4me1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM986082: siGATA_H3K4me1_E2_r1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29784141
Reads aligned (%)
97.8
Duplicates removed (%)
4.2
Number of peaks
71674 (qval < 1E-05)

hg19

Number of total reads
29784141
Reads aligned (%)
97.6
Duplicates removed (%)
4.3
Number of peaks
71286 (qval < 1E-05)

Base call quality data from DBCLS SRA