Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
siGATA_FOXA1_Veh
cell line
MCF-7
cell type
breast cancer cells
stimulated with
Vehicle
genotype/variation
GATA knockdown
tranfected with
ON-TARGET plus siRNA J-0033781-09, siGATA3-Custom-1, siGATA3-Custom-2
chip antibody
anti-FoxA1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM986066: siGATA_FOXA1_Veh_r1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
30657177
Reads aligned (%)
93.6
Duplicates removed (%)
13.9
Number of peaks
80280 (qval < 1E-05)

hg19

Number of total reads
30657177
Reads aligned (%)
93.2
Duplicates removed (%)
14.6
Number of peaks
80253 (qval < 1E-05)

Base call quality data from DBCLS SRA