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BigWig
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX176862
GSM986065: siNT FOXA1 Veh r1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
siNT_FOXA1_Veh
cell line
MCF-7
cell type
breast cancer cells
stimulated with
Vehicle
genotype/variation
negative control
tranfected with
AllStars Negative Control siRNA (Cat nr:1027281, Qiagen)
chip antibody
anti-FoxA1
chip antibody vendor
Abcam
Sequenced DNA Library
library_name
GSM986065: siNT_FOXA1_Veh_r1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
34232106
Reads aligned (%)
82.0
Duplicates removed (%)
15.6
Number of peaks
73871 (qval < 1E-05)
hg38
Number of total reads
34232106
Reads aligned (%)
83.5
Duplicates removed (%)
14.5
Number of peaks
73760 (qval < 1E-05)
Base call quality data from
DBCLS SRA