SRX176645
GSM985137: WCE 3mM sodium bicarbonate; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
WCE 3mM sodium bicarbonate
antibody
none
agent
3mM sodium bicarbonate
cell line
HeLa

Sequenced DNA Library

library_name
GSM985137: WCE 3mM sodium bicarbonate
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22835742
Reads aligned (%)
90.1
Duplicates removed (%)
13.1
Number of peaks
766 (qval < 1E-05)

hg19

Number of total reads
22835742
Reads aligned (%)
88.6
Duplicates removed (%)
13.7
Number of peaks
481 (qval < 1E-05)

Base call quality data from DBCLS SRA