SRX176319
GSM984795: M1-3/9 H3K9me3 #1926; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Embryonic Fibroblasts
chip antibody
In house anti-H3K9me3 #1926
genotype
Pax3 null/ Pax9 knock down
cell type
Embryonic Fibroblasts

Sequenced DNA Library

library_name
GSM984795: M1-3/9 H3K9me3 #1926
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40022290
Reads aligned (%)
93.6
Duplicates removed (%)
35.4
Number of peaks
1128 (qval < 1E-05)

mm9

Number of total reads
40022290
Reads aligned (%)
93.4
Duplicates removed (%)
36.7
Number of peaks
1150 (qval < 1E-05)

Base call quality data from DBCLS SRA