SRX176066
GSM984398: C42B H3K4ME3 treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
C4-2B
chip antibody
H3K4Me3
chip antibody manufacturer
Millipore
treatment
DHT treated (4h)

Sequenced DNA Library

library_name
GSM984398: C42B H3K4ME3 treated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11345824
Reads aligned (%)
93.5
Duplicates removed (%)
10.8
Number of peaks
17275 (qval < 1E-05)

hg19

Number of total reads
11345824
Reads aligned (%)
92.8
Duplicates removed (%)
12.1
Number of peaks
17299 (qval < 1E-05)

Base call quality data from DBCLS SRA