Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nfib

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
KP1-PD2
cell line
KP1
cell type
tumor-derived cell line
genotype/variation
Trp53-/-;Rb1-/-
nfib expression level
Nfib high
sample type
Nfib pulldown
chip antibody
Nfib antibody (Sigma, #HPA003956)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
24572257
Reads aligned (%)
38.4
Duplicates removed (%)
20.8
Number of peaks
2345 (qval < 1E-05)

mm9

Number of total reads
24572257
Reads aligned (%)
38.3
Duplicates removed (%)
20.9
Number of peaks
2310 (qval < 1E-05)

Base call quality data from DBCLS SRA