SRX173201
GSM980657: AR DHT rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP
cell type
Prostate epithelial cells derived from vertebral bone metastasis from patient with hormone refractory cancer.
passages
15-35
cell line
VCaP
treatment
100 nM DHT
chip antibody
AR (Kang et al. 2004; Sahu et al. 2011)

Sequenced DNA Library

library_name
GSM980657: AR DHT rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38667214
Reads aligned (%)
84.1
Duplicates removed (%)
17.5
Number of peaks
45933 (qval < 1E-05)

hg19

Number of total reads
38667214
Reads aligned (%)
83.6
Duplicates removed (%)
18.4
Number of peaks
45880 (qval < 1E-05)

Base call quality data from DBCLS SRA