Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Blood
Cell type
B cell precursors
NA
NA

Attributes by original data submitter

Sample

source_name
C-MYC expressing primary B cell precursors (D7-9 post transduction)
genotype
53BP1-/- C57BL/6
vector transduced
C-MYC MIGR1
antibody
Anti-gamma H2A.X (phospho S139) (ab2893, Abcam)
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Dead cells were removed, cells formaldehyde treated and pellets snap frozen. Pellets were resuspended in sonication buffer, sonicated and lysed in RIPA buffer before performing ChIP with the appropriate antibody. ChIP-seq libraries were prepared using NEBNext ChIP-Seq Library Prep Master Mix Set and NEBNEXT Multiplex Oligos for Illumina.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
38917434
Reads aligned (%)
94.0
Duplicates removed (%)
22.0
Number of peaks
1514 (qval < 1E-05)

mm9

Number of total reads
38917434
Reads aligned (%)
93.9
Duplicates removed (%)
22.1
Number of peaks
1497 (qval < 1E-05)

Base call quality data from DBCLS SRA