SRX172337
GSM978761: IRF4KO CD4 T -IL21 BATF; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Batf

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T Cells
strain
C57BL/6
cell type
CD4+ T Cells
tissue
Spleen
chip antibody
BATF (from Ken Murphy [rabbit ], not commercial available)

Sequenced DNA Library

library_name
GSM978761: IRF4KO CD4 T -IL21 BATF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
1825523
Reads aligned (%)
93.9
Duplicates removed (%)
68.0
Number of peaks
115 (qval < 1E-05)

mm9

Number of total reads
1825523
Reads aligned (%)
93.8
Duplicates removed (%)
68.1
Number of peaks
112 (qval < 1E-05)

Base call quality data from DBCLS SRA