Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Others
Cell type
Achilles Tendon
MeSH Description
Tendon that connects the muscles in the back of the calf to the HEEL BONE.

Attributes by original data submitter

Sample

source_name
Achilles tendons
strain
C57BL/6
group
28 days

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
Libraries were prepared from 200-500 ng of genomic DNA (from 5-6 tendons) digested with 60 units of TaqαI and 30 units of MspI (NEB) sequentially and then extracted with Zymo Research (ZR) DNA Clean & Concentrator™-5 kit (Cat#: D4003) Fragments were ligated to pre-annealed adapters containing 5’-methyl-cytosine instead of cytosine according to Illumina’s specified guidelines (www.illumina.com). Adaptor-ligated fragments of 150–250 bp and 250–350 bp in size were recovered from a 2.5% NuSieve 1:1 agarose gel (Zymoclean™ Gel DNA Recovery Kit, ZR Cat#: D4001). The fragments were then bisulfite-treated using the EZ DNA Methylation-Lightning™ Kit (ZR, Cat#: D5020). Preparative-scale PCR was performed and the resulting products were purified (DNA Clean & Concentrator™ - ZR, Cat#D4005) for sequencing on an Illumina HiSeq.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
30837339
Reads aligned (%)
64.7
Coverage rate (×)
1.7
Number of hyper MRs
205462 (qval < 1E-05)

mm9

Number of total reads
30837339
Reads aligned (%)
64.7
Coverage rate (×)
1.7
Number of hyper MRs
205234 (qval < 1E-05)

Base call quality data from DBCLS SRA