Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Breast cancer cells
tissue type
ER+/PRA+/PRB- T47D cell models
er/pr status
ER+/PRA+/PRB-
drug treatment
10 nM R5020
hormone exposure time
45 minutes
chip antibody
none (INPUT)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
13957904
Reads aligned (%)
99.2
Duplicates removed (%)
4.6
Number of peaks
469 (qval < 1E-05)

hg19

Number of total reads
13957904
Reads aligned (%)
98.4
Duplicates removed (%)
5.9
Number of peaks
654 (qval < 1E-05)

Base call quality data from DBCLS SRA