SRX170836
GSM972981: MmTN MeCP2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
post mitotic neuronal cells
mbd protein
MeCP2
cell type
ES-derived post mitotic neuronal cells
genotype
wild type
background strain
mixed 129-C57Bl/6

Sequenced DNA Library

library_name
GSM972981: MmTN_MeCP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
94779351
Reads aligned (%)
55.9
Duplicates removed (%)
22.0
Number of peaks
617 (qval < 1E-05)

mm9

Number of total reads
94779351
Reads aligned (%)
55.7
Duplicates removed (%)
21.9
Number of peaks
655 (qval < 1E-05)

Base call quality data from DBCLS SRA