Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

source_name
KARPAS-422
cell line
KARPAS-422
cell type
Diffuse large B-cell lymphoma germinal center B-cell type
chip antibody
Brd4 (E2A7X) Rabbit mAb #13440
treatment
DMSO
geo_loc_name
missing
collection_date
missing

Sequenced DNA Library

library_name
GSM6460431
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with 1% formaldehyde for 12 minutes. After quenching with 125 M glycine and cell lysis, chromatin was sonicated using a E220 focused-ultrasonicator (Covaris). The sequencing libraries were prepared using NEBNext Ultra II DNA kit (#E7645S)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
33630027
Reads aligned (%)
89.8
Duplicates removed (%)
13.2
Number of peaks
1596 (qval < 1E-05)

hg19

Number of total reads
33630027
Reads aligned (%)
88.9
Duplicates removed (%)
13.5
Number of peaks
845 (qval < 1E-05)

Base call quality data from DBCLS SRA