Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD19+IgD-B220+IgM-CD25+ckit- pre-B cells
strain
C57BL/6J
tissue
bone marrow
age
5-7 weeks old
cell type
CD19+IgD-B220+IgM-CD25+ckit- pre-B cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked with 1% PFA 10 minutes on ice and lysed. Cross-linked DNA was incubated with H3 antibody. H3-bound chromatin was used to attach NEXTflexTM adapters. Chromatin with ligated adapters was incubated with H3K27Ac antibody. H3K27Ac+ chromatin was decrosslinked and amplified with primers recognizing adapters.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
26555999
Reads aligned (%)
97.4
Duplicates removed (%)
14.4
Number of peaks
205 (qval < 1E-05)

mm9

Number of total reads
26555999
Reads aligned (%)
97.2
Duplicates removed (%)
15.2
Number of peaks
201 (qval < 1E-05)

Base call quality data from DBCLS SRA