Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

source_name
Blood
tissue
Blood
developmental stage
Adult
genotype/variation
wild type
cell type
HSC
chip antibody details
Anti-Brg1 (Khavari, P. A., et al., 1993, Nature, 366:170-174)

Sequenced DNA Library

library_name
GSM971333: HSC_Brg1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
20170056
Reads aligned (%)
45.3
Duplicates removed (%)
11.1
Number of peaks
6139 (qval < 1E-05)

hg38

Number of total reads
20170056
Reads aligned (%)
45.8
Duplicates removed (%)
10.8
Number of peaks
6119 (qval < 1E-05)

Base call quality data from DBCLS SRA