Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
DU145_DMSO treated
cell line
DU145
cell types
castration resitant prostate cancer cells
cell phenotype
AR-negative, EZH2 inhibitor-insensitive
passages
13-17
treated with
vehicle (DMSO)
chip antibody
H3K27 trimethylation (Cell Signaling, C36B11, #9733S) and H2Av (Active Motif 39715)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Prostate cancer cells were crosslinked with 1% formaldehyde and lysed in RIPA buffer with 0.3 M NaCl. ChIP DNA was purified using PCR Purification Kit (Qiagen) and then quantified by Quant-iTTM dsDNA HS Assay Kit (Invitrogen). ChIP-Seq libraries were prepared using ThruPLEX-FD Prep Kit (Rubicon Genomics) according to the manufacturer's protocol.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
16487598
Reads aligned (%)
93.5
Duplicates removed (%)
20.3
Number of peaks
3660 (qval < 1E-05)

hg19

Number of total reads
16487598
Reads aligned (%)
93.1
Duplicates removed (%)
20.6
Number of peaks
3668 (qval < 1E-05)

Base call quality data from DBCLS SRA