Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
Osteoblasts
NA
NA

Attributes by original data submitter

Sample

source_name
Primary osteoblasts
cell type
Calvarial osteoblasts
age
P1
strain
C57BL/6
genotype
wild-type
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were isolated by 1 unit/ml Liberase TM (05401119001, Roche), Protein-DNA complexes were crosslinked with 1% formaldehyde, Lysates were clarified from sonicated nuclei and Protein-DNA complexes were purified with FLAG antibody. Libraries were prepared ThruPLEX®-FD Prep Kit (R40012, Rubicon Genomics) according to manufacturer’s instruction

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
38389136
Reads aligned (%)
96.2
Duplicates removed (%)
15.8
Number of peaks
335 (qval < 1E-05)

mm9

Number of total reads
38389136
Reads aligned (%)
95.8
Duplicates removed (%)
15.7
Number of peaks
377 (qval < 1E-05)

Base call quality data from DBCLS SRA