SRX16983343
GSM6436757: smNPCs, Parental, SMARCA4/BRG1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCA4

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSC-derivd NPCs
chip antibody
SMARCA4/BRG1, ab110641, abcam
cell type
iPSC-derivd NPCs
genotype
parental

Sequenced DNA Library

library_name
GSM6436757
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Active Motif

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40439719
Reads aligned (%)
95.3
Duplicates removed (%)
8.5
Number of peaks
4976 (qval < 1E-05)

hg19

Number of total reads
40439719
Reads aligned (%)
94.7
Duplicates removed (%)
9.4
Number of peaks
5064 (qval < 1E-05)

Base call quality data from DBCLS SRA