Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Eμ-myc Arf-/- Trp53+/+ lymphomas
strain
C57BL/6
cell type
B cells from lymph nodes
genotype
Arf-/- Trp53+/+

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell extracts were sonicated to solubilize the chromatin. The chromatin extracts containing DNA fragments with an average size of 250 bp were immunoprecipitated using p53 NCL-p53-CM5p (Novocastra laboratories) antibody. Libraries were prepared for Illumina sequencing using a standard protocol consisting in blunting, addition of dA overhangs, ligation of Illumina adapters, selection on gel and PCR with index primers.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
54989997
Reads aligned (%)
96.6
Duplicates removed (%)
24.7
Number of peaks
1654 (qval < 1E-05)

mm9

Number of total reads
54989997
Reads aligned (%)
96.3
Duplicates removed (%)
24.7
Number of peaks
1603 (qval < 1E-05)

Base call quality data from DBCLS SRA