Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Eμ-myc Trp53KI/∆ lymphomas
strain
C57BL/6
cell type
B cells from lymph nodes
genotype
Trp53(KI/delta)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Whole cell extracts were sonicated to solubilize the chromatin. The chromatin extracts containing DNA fragments with an average size of 250 bp were immunoprecipitated using p53 NCL-p53-CM5p (Novocastra laboratories) antibody. Libraries were prepared for Illumina sequencing using a standard protocol consisting in blunting, addition of dA overhangs, ligation of Illumina adapters, selection on gel and PCR with index primers.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
83359407
Reads aligned (%)
94.4
Duplicates removed (%)
21.0
Number of peaks
2797 (qval < 1E-05)

mm9

Number of total reads
83359407
Reads aligned (%)
94.1
Duplicates removed (%)
20.9
Number of peaks
2804 (qval < 1E-05)

Base call quality data from DBCLS SRA