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For hg38
BigWig
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: KELLY
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1690209
GSM2113525: KELLY INPUT; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
KELLY
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
source_name
KELLY_Neuroblastoma
cell line
KELLY
cell type
neuroblastoma cell line
growth condition
10% FBS, DMEM
treated with
None
chip antibody
NA
chip antibody vendor
NA
input
NA
barcode
TTAGGC
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48237870
Reads aligned (%)
93.2
Duplicates removed (%)
10.1
Number of peaks
1291 (qval < 1E-05)
hg19
Number of total reads
48237870
Reads aligned (%)
92.5
Duplicates removed (%)
11.3
Number of peaks
1165 (qval < 1E-05)
Base call quality data from
DBCLS SRA