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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ssrp1
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX1688270
GSM2111731: ssrp1.rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ssrp1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
mESC
strain
129/Ola
antibody
ssrp1
antibody vendor
santa cruz
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinkedand sonicated chromatin was incubated with the ab indicated. Complex associated DNA was purified and sequenced. Libraries were constructed as per manufacturers instructions for Illumina Tru-seq.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
33886395
Reads aligned (%)
87.9
Duplicates removed (%)
47.5
Number of peaks
683 (qval < 1E-05)
mm9
Number of total reads
33886395
Reads aligned (%)
87.8
Duplicates removed (%)
47.6
Number of peaks
651 (qval < 1E-05)
Base call quality data from
DBCLS SRA