Antigen

Antigen Class

TFs and others

Antigen

CHD8

Cell type

Cell type Class

Neural

Cell type

Brain

MeSH Description

The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Sample

source_name

human brain (Brodmann 44)

tissue

brain (Brodmann 44)

disease state

non-diseased

chip antibody

CHD8 (Abcam, catalog# ab84527, lot# GR22849)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

CHIP-SEQ was based on Standard protocols used in ENCODE

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

28604432

Reads aligned (%)

0.0

Duplicates removed (%)

0.0

Number of peaks

3548 (qval < 1E-05)

hg19

Number of total reads

28604432

Reads aligned (%)

0.0

Duplicates removed (%)

0.1

Number of peaks

3283 (qval < 1E-05)