SRX1674090
GSM2104320: Total RNAPII WT ChIP-seq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Young adults
age
Young adults
genotype
Wt
chip antibody
8wg16 Millipore (05-952)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated worms and immunoprecipitated DNA complexes were isolated with antibody. Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
50879695
Reads aligned (%)
97.0
Duplicates removed (%)
44.5
Number of peaks
10850 (qval < 1E-05)

ce10

Number of total reads
50879695
Reads aligned (%)
97.0
Duplicates removed (%)
44.5
Number of peaks
10473 (qval < 1E-05)

Base call quality data from DBCLS SRA