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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: MIN6B1
ATCC
MeSH
RIKEN BRC
SRX1671888
GSM2102791: Input 2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Pancreas
Cell type
MIN6B1
NA
NA
Attributes by original data submitter
Sample
source_name
MIN6 cells
cell type
Insulinoma derive pancreatic beta cells
chip antibody
Nkx2.2 (Sigma-Hpa003468)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Nkx2.2-DNA complexes were isolated with Nkx2.2 antibody. Libraries were prepared as per instructions of the Kapa Hyper kit (Illumina)
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
18977557
Reads aligned (%)
88.8
Duplicates removed (%)
12.5
Number of peaks
478 (qval < 1E-05)
mm9
Number of total reads
18977557
Reads aligned (%)
88.5
Duplicates removed (%)
12.6
Number of peaks
543 (qval < 1E-05)
Base call quality data from
DBCLS SRA