Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Muscle

Cell type

Quadriceps Muscle

MeSH Description

The quadriceps femoris. A collective name of the four-headed skeletal muscle of the thigh, comprised of the rectus femoris, vastus intermedius, vastus lateralis, and vastus medialis.

Sample

source_name

quadriceps muscle

strain

C57B/6

age

4-months old

gender

male

genotype/variation

HDAC3 Wild-type

antibody

none (input)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

DNA or RNA is extracted using Qiagen kits Library contruction follows illumina kits

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

34149157

Reads aligned (%)

98.9

Duplicates removed (%)

50.1

Number of peaks

402 (qval < 1E-05)

mm9

Number of total reads

34149157

Reads aligned (%)

98.8

Duplicates removed (%)

50.2

Number of peaks

370 (qval < 1E-05)