Antigen

Antigen Class

TFs and others

Antigen

ZBTB4

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

age

unknown

sample type

cell line

cell line

GM12878

sex

female

health state

unknown

dev stage

adult

donor ID

ENCDO000AAK

lab

Michael Snyder, Stanford

source

Kevin White

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

45415795

Reads aligned (%)

98.8

Duplicates removed (%)

28.3

Number of peaks

1395 (qval < 1E-05)

hg19

Number of total reads

45415795

Reads aligned (%)

98.0

Duplicates removed (%)

28.7

Number of peaks

814 (qval < 1E-05)