Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

age

16 year

sample type

tissue

tissue

right lobe of liver

sex

female

health state

DM: no; HTN: no; CAD: no

dev stage

child

donor ID

ENCDO575EGL

lab

Bradley Bernstein, Broad

source

Shin Lin

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

35211273

Reads aligned (%)

98.3

Duplicates removed (%)

14.2

Number of peaks

44491 (qval < 1E-05)

hg19

Number of total reads

35211273

Reads aligned (%)

97.5

Duplicates removed (%)

15.0

Number of peaks

44231 (qval < 1E-05)