Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Breast

Cell type

MCF 10A

Primary Tissue

Breast

Tissue Diagnosis

Fibrocystic Disease

Sample

age

36 year

sample type

cell line

cell line

MCF 10A

sex

female

health state

fibrocystic disease

dev stage

adult

donor ID

ENCDO000AAP

lab

Bradley Bernstein, Broad

source

Mats Ljungman

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

14872503

Reads aligned (%)

98.6

Duplicates removed (%)

12.3

Number of peaks

29705 (qval < 1E-05)

hg19

Number of total reads

14872503

Reads aligned (%)

97.9

Duplicates removed (%)

13.5

Number of peaks

29560 (qval < 1E-05)