Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Pluripotent stem cell

Cell type

iPS cells

NA

NA

Sample

sample type

cell line

sex

male

dev_stage

adult

age

30 year

donor ID

ENCDO882UJI

lab

Bradley Bernstein, Broad

source

Yin Shen

cell line

WTC11

passage number

37

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

17332026

Reads aligned (%)

95.9

Duplicates removed (%)

5.7

Number of peaks

10127 (qval < 1E-05)

hg19

Number of total reads

17332026

Reads aligned (%)

95.2

Duplicates removed (%)

6.8

Number of peaks

10120 (qval < 1E-05)