Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Digestive tract

Cell type

Colonic mucosa

NA

NA

Sample

tissue

colonic mucosa

sample type

tissue

sex

female

dev_stage

adult

age

41 year

donor ID

ENCDO575WHY

lab

Bradley Bernstein, Broad

source

Shin Lin

health state

DM: no; HTN: no; CAD: no

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

19483489

Reads aligned (%)

98.2

Duplicates removed (%)

22.4

Number of peaks

17111 (qval < 1E-05)

hg19

Number of total reads

19483489

Reads aligned (%)

97.1

Duplicates removed (%)

23.5

Number of peaks

17061 (qval < 1E-05)