Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
Frontal cortex
NA
NA

Attributes by original data submitter

Sample

age
90 or above year
sample type
tissue
tissue
middle frontal area 46
sex
female
dev stage
adult
donor ID
ENCDO470GFA
lab
Bradley Bernstein, Broad
source
Rush University

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
10571841
Reads aligned (%)
98.3
Duplicates removed (%)
3.6
Number of peaks
18312 (qval < 1E-05)

hg19

Number of total reads
10571841
Reads aligned (%)
97.5
Duplicates removed (%)
4.2
Number of peaks
18343 (qval < 1E-05)

Base call quality data from DBCLS SRA