Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

age
21 year
sample type
primary cell
cell type
CD8-positive, alpha-beta T cell
sex
male
dev stage
adult
donor ID
ENCDO781BMZ
lab
Bradley Bernstein, Broad
source
Charles Lee

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
34073161
Reads aligned (%)
97.5
Duplicates removed (%)
16.6
Number of peaks
18957 (qval < 1E-05)

hg19

Number of total reads
34073161
Reads aligned (%)
96.3
Duplicates removed (%)
17.9
Number of peaks
18752 (qval < 1E-05)

Base call quality data from DBCLS SRA