SRX1632692
GSM2089656: OPC B Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Oligodendrocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Oligodendrocyte progenitor cells
strain
C57BL/6
cell type
Oligodendrocyte progenitor cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Klf6-DNA complexes were isolated with a Rabbit polyclonal anti-Klf6 anitbody (Santa Cruz). Illumina Truseq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
70770178
Reads aligned (%)
96.6
Duplicates removed (%)
30.3
Number of peaks
558 (qval < 1E-05)

mm9

Number of total reads
70770178
Reads aligned (%)
96.3
Duplicates removed (%)
30.3
Number of peaks
618 (qval < 1E-05)

Base call quality data from DBCLS SRA