Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
OVOL2

Cell type

Cell type Class
Others
Cell type
Epithelium, Corneal
MeSH Description
Stratified squamous epithelium that covers the outer surface of the CORNEA. It is smooth and contains many free nerve endings.

Attributes by original data submitter

Sample

source_name
primary corneal epithelium cell
cell type
corneal epithelium cell
chip antibody
OVOL2
vendor
SantaCruz Biotech

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
10 ng of immunoprecipitated DNA was ligated with adaptors of Illumina GAIIx using illumina TruSeq ChIP Sample Prep Kit (illumina).

Sequencing Platform

instrument_model
Illumina MiSeq

hg19

Number of total reads
20141619
Reads aligned (%)
85.8
Duplicates removed (%)
12.3
Number of peaks
741 (qval < 1E-05)

hg38

Number of total reads
20141619
Reads aligned (%)
87.9
Duplicates removed (%)
11.1
Number of peaks
727 (qval < 1E-05)

Base call quality data from DBCLS SRA