Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Melanoma cell lines
ATCC
MeSH
RIKEN BRC
SRX1621032
GSM2084246: EZH2 Y641F 855D MEL JQEZ5 H3K27 IP; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Epidermis
Cell type
Melanoma cell lines
NA
NA
Attributes by original data submitter
Sample
source_name
EZH2_Y641F_855D_MEL_JQEZ5_H3K27_IP
strain background
C57BL/6
cell line
855
genotype/variation
EZH2 gain-of-function Y641F mutation
tissue/cell type
Melanoma tumor cell line
cell type
Melanocyte
chip antibody
H3K27me3
chip antibody vendor
Millipore
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
B cells were isolated from animals' spleen. Briefly, spleens were made into single cell suspension, stained with CD19-biotin, washed, stained with antibiotin magnetic beads and separated on an Automacs magnetic separator. Illumina Truseq ChIPseq kit
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
49152607
Reads aligned (%)
97.4
Duplicates removed (%)
7.6
Number of peaks
314 (qval < 1E-05)
mm9
Number of total reads
49152607
Reads aligned (%)
97.3
Duplicates removed (%)
7.6
Number of peaks
333 (qval < 1E-05)
Base call quality data from
DBCLS SRA