Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Epidermis
Cell type
Melanoma cell lines
NA
NA

Attributes by original data submitter

Sample

source_name
EZH2_Y641F_855D_MEL_JQEZ5_H3K27_IP
strain background
C57BL/6
cell line
855
genotype/variation
EZH2 gain-of-function Y641F mutation
tissue/cell type
Melanoma tumor cell line
cell type
Melanocyte
chip antibody
H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
B cells were isolated from animals' spleen. Briefly, spleens were made into single cell suspension, stained with CD19-biotin, washed, stained with antibiotin magnetic beads and separated on an Automacs magnetic separator. Illumina Truseq ChIPseq kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
49152607
Reads aligned (%)
97.4
Duplicates removed (%)
7.6
Number of peaks
314 (qval < 1E-05)

mm9

Number of total reads
49152607
Reads aligned (%)
97.3
Duplicates removed (%)
7.6
Number of peaks
333 (qval < 1E-05)

Base call quality data from DBCLS SRA